Global Pathogen Analysis Platform (GPAP) AI Research

Our new website is live

Sat, 10 Oct 2026 00:00:00 +0000

Welcome to the website of Global Pathogen Analysis Platform (GPAP) AI Research. Here you will find news from GPAP AI Research and the people building the Global Pathogen Analysis Platform.

Team

Sat, 10 Oct 2026 00:00:00 +0000

When Lower Reconstruction Loss Hurts: Distributionally Robust Refinement for Low-Bit LLM Quantization

Thu, 08 Oct 2026 00:00:00 +0000

Discrete Wasserstein Flows for One-Step Generative Modeling

Thu, 01 Oct 2026 00:00:00 +0000

Multiple drivers of genomic novelty across ruminants

Tue, 29 Sep 2026 00:00:00 +0000

Sequence-Informed Geometric Evaluation of RNA 3D Structures

Wed, 09 Sep 2026 00:00:00 +0000

Quantifying the inclusion of cardiovascular research into clinical guidelines

Mon, 24 Aug 2026 00:00:00 +0000

GPAP launches at DTU

Mon, 10 Aug 2026 00:00:00 +0000

The Global Pathogen Analysis Platform (GPAP) held its launch event on 10 August 2026 at the Technical University of Denmark, followed by a workshop that started the co-creation process with partners.

Members of GPAP AI Research at the launch event.

Samir Bhatt and Harrison Bo Hua Zhu on stage at the launch event.

Guests trying out GPAP at the launch event.

Read about the launch event and the co-creation workshop on gpap.global. For official GPAP news, see gpap.global/news.

SR-OPSD: Self-Referenced On-Policy Self-Distillation

Mon, 10 Aug 2026 00:00:00 +0000

Definitions and Metrics of Interdisciplinarity: A PRISMA-ScR Scoping Review Protocol

Fri, 24 Jul 2026 00:00:00 +0000

Changed frequency of enterovirus hospitalisations after change of polio vaccination scheme: a nation-wide cohort study from Denmark

Wed, 01 Jul 2026 00:00:00 +0000

Large-scale genomic surveillance reveals immunosuppression drives mutation dynamics in persistent SARS-CoV-2 infections

Fri, 19 Jun 2026 00:00:00 +0000

Generative Modeling on Metric Graphs via Neural Optimal Transport

Mon, 15 Jun 2026 00:00:00 +0000

Federated analysis of incubation period distributions using individual-level observed data and heterogeneous summary statistics

Tue, 02 Jun 2026 00:00:00 +0000

PlayClass: Automated Play Behaviour Classification in Poultry

Tue, 26 May 2026 00:00:00 +0000

Interdomain Attention: Beyond Token-Level Key-Value Memory

Sat, 23 May 2026 00:00:00 +0000

Ischemic heart disease burden and healthcare system readiness across sub-Saharan Africa

Wed, 13 May 2026 00:00:00 +0000

Saliency-Aware Regularized Quantization Calibration for Large Language Models

Thu, 07 May 2026 00:00:00 +0000

Entropic Riemannian Neural Optimal Transport

Tue, 05 May 2026 00:00:00 +0000

Evaluation of clinical utility in emulated clinical trials

Mon, 04 May 2026 00:00:00 +0000

Global approaches to infectious disease surveillance and modeling

Fri, 01 May 2026 00:00:00 +0000

Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models with PathogenFinder2

Sat, 21 Mar 2026 00:00:00 +0000

Riemannian Neural Optimal Transport

Tue, 03 Feb 2026 00:00:00 +0000

SARS-CoV-2 reinfections and subsequent risk of hospital-diagnosed post-acute sequelae in Denmark (2020–2022): a nationwide cohort study

Sat, 31 Jan 2026 00:00:00 +0000

Transmission Networks and Intervention Effects From SARS-CoV-2 Genomic and Social Network Data in Denmark

Sun, 11 Jan 2026 00:00:00 +0000

P1293 Rapid Urbanisation and IBD Prevalence in Rural India: Insights from a Satellite Based Deep Learning Index

Thu, 01 Jan 2026 00:00:00 +0000

“Developing machine learning models of self-reported and register-based data to predict eating disorders in adolescence”

Tue, 16 Dec 2025 00:00:00 +0000

Meteorological and environmental drivers of West Nile virus prevalence in Culex pipiens mosquitoes in Emilia-Romagna, Italy in 2013 to 2022

Fri, 05 Dec 2025 00:00:00 +0000

phylo2vec: a library for vector-based phylogenetic tree manipulation

Tue, 28 Oct 2025 00:00:00 +0000

Beyond distance: integrating economic burden into large-scale primary healthcare accessibility analysis

Mon, 27 Oct 2025 00:00:00 +0000

Development and validation of early warning scores predicting 24-hour mortality addressing intercurrent medical interventions: a multi-centre retrospective cohort study of 2·08 million hospital encounters

Tue, 14 Oct 2025 00:00:00 +0000

Novo Nordisk Foundation funds GPAP

Mon, 13 Oct 2025 00:00:00 +0000

The Novo Nordisk Foundation is funding the Global Pathogen Analysis Platform (GPAP) with up to DKK 200 million over six years, to strengthen global defenses against future pandemics.

Read the Novo Nordisk Foundation’s announcement. For official GPAP news, see gpap.global/news.

Continuous football player tracking from discrete broadcast data

Wed, 01 Oct 2025 00:00:00 +0000

Deep learning from videography as a tool for measuring E. coli infection in poultry

Wed, 01 Oct 2025 00:00:00 +0000

Exploring nationwide patterns of sleep problems from late adolescence to adulthood using machine learning

Wed, 24 Sep 2025 00:00:00 +0000

How early-life adversity affects the risk of pediatric-onset immune-mediated inflammatory disease

Wed, 23 Jul 2025 00:00:00 +0000

Excess mortality and hospitalisations associated with respiratory syncytial virus, influenza, and COVID-19 among adults in Denmark (2015–2024): a modelling study

Fri, 18 Jul 2025 00:00:00 +0000

Robert Verity, Samir Bhatt, Anne Cori, Seth Flaxman, and Swapnil Mishra’s contribution to the Discussion of ‘Some statistical aspects of the Covid-19 response’ by Wood et al.

Wed, 02 Jul 2025 00:00:00 +0000

Genomic Surveillance of Climate-Amplified Cholera Outbreak, Malawi, 2022–2023

Wed, 28 May 2025 00:00:00 +0000

GRAPEVNE - Graphical Analytical Pipeline Development Environment for Infectious Diseases

Tue, 27 May 2025 00:00:00 +0000

Socioeconomic and temporal heterogeneity in SARS-CoV-2 exposure and disease in England from May 2020 to February 2023

Wed, 21 May 2025 00:00:00 +0000

Estimating the worst-case scenario for malaria parasite rate in sub-Saharan Africa

Fri, 16 May 2025 00:00:00 +0000

Exploring the potential and limitations of deep learning and explainable AI for longitudinal life course analysis

Thu, 24 Apr 2025 00:00:00 +0000

Distinct evolutionary regimes across domains of the Plasmodium falciparum CSP gene

Fri, 18 Apr 2025 00:00:00 +0000

Fast and Slow Optimal Trading with Exogenous Information

Tue, 01 Apr 2025 00:00:00 +0000

Drivers of avian genomic change revealed by evolutionary rate decomposition

Wed, 19 Mar 2025 00:00:00 +0000

Mapping the global prevalence, incidence, and mortality of Plasmodium falciparum and Plasmodium vivax malaria, 2000–22: a spatial and temporal modelling study

Sat, 01 Mar 2025 00:00:00 +0000

Cause-specific mortality after spousal bereavement in a Danish register-based cohort

Thu, 20 Feb 2025 00:00:00 +0000

Artificial intelligence for modelling infectious disease epidemics

Wed, 19 Feb 2025 00:00:00 +0000

Generalised Bayesian distance-based phylogenetics for the genomics era

Thu, 06 Feb 2025 00:00:00 +0000

Bayesian Inference of Phylogenetic Distances: Revisiting the Eigenvalue Approach

Thu, 23 Jan 2025 00:00:00 +0000

Modelling the Stochastic Importation Dynamics and Establishment of Novel Pathogenic Strains Using a General Branching Processes Framework

Wed, 01 Jan 2025 00:00:00 +0000

Recurrent Memory for Online Interdomain Gaussian Processes

Wed, 01 Jan 2025 00:00:00 +0000

Ethnicity and anthropometric deficits in children: A cross-sectional analysis of national survey data from 18 countries in sub-Saharan Africa

Tue, 31 Dec 2024 00:00:00 +0000

Estimating the impact of imported malaria on local transmission in a near elimination setting: a case study from Bhutan

Wed, 16 Oct 2024 00:00:00 +0000

Non-pharmaceutical interventions: evaluating challenges and priorities for future health shocks

Mon, 07 Oct 2024 00:00:00 +0000

Configurable Multilingual ASR with Speech Summary Representations

Sun, 06 Oct 2024 00:00:00 +0000

Climate Change and Malaria: A Call for Robust Analytics

Wed, 18 Sep 2024 00:00:00 +0000

Modelling the impact of vaccination on SARS-CoV-2 transmission in England

Sat, 07 Sep 2024 00:00:00 +0000

Modelling the implementation of narrow versus broader spectrum antibiotics in the empiric treatment of E. coli bacteraemia

Tue, 23 Jul 2024 00:00:00 +0000

SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects

Tue, 02 Jul 2024 00:00:00 +0000

Phylo2Vec: A Vector Representation for Binary Trees

Wed, 26 Jun 2024 00:00:00 +0000

The interaction of disease transmission, mortality, and economic output over the first 2 years of the COVID-19 pandemic

Thu, 13 Jun 2024 00:00:00 +0000

Three steps towards comparability and standardization among molecular methods for characterizing insect communities

Sun, 05 May 2024 00:00:00 +0000

Severity of respiratory tract infections depends on the infectious dose. Perspectives for the next pandemic

Tue, 30 Apr 2024 00:00:00 +0000

Bayesian workflow for time-varying transmission in stratified compartmental infectious disease transmission models

Mon, 29 Apr 2024 00:00:00 +0000

The Gompertz Law emerges naturally from the inter-dependencies between sub-components in complex organisms

Fri, 12 Jan 2024 00:00:00 +0000

Deep learning and MCMC with aggVAE for shifting administrative boundaries: mapping malaria prevalence in Kenya

Mon, 01 Jan 2024 00:00:00 +0000

The Limits of the Constant-rate Birth–Death Prior for Phylogenetic Tree Topology Inference

Thu, 28 Dec 2023 00:00:00 +0000

Leaping through Tree Space: Continuous Phylogenetic Inference for Rooted and Unrooted Trees

Fri, 01 Dec 2023 00:00:00 +0000

Estimating the epidemic reproduction number from temporally aggregated incidence data: A statistical modelling approach and software tool

Mon, 28 Aug 2023 00:00:00 +0000

Effectiveness of social distancing measures and lockdowns for reducing transmission of COVID-19 in non-healthcare, community-based settings

Wed, 23 Aug 2023 00:00:00 +0000

Application of referenced thermodynamic integration to Bayesian model selection

Mon, 14 Aug 2023 00:00:00 +0000

Machine learning models of healthcare expenditures predicting mortality: A cohort study of spousal bereaved Danish individuals

Mon, 07 Aug 2023 00:00:00 +0000

Predicting mortality risk after a fall in older adults using health care spending patterns: a population-based cohort study

Tue, 01 Aug 2023 00:00:00 +0000

Speaker Embeddings as Individuality Proxy for Voice Stress Detection

Tue, 01 Aug 2023 00:00:00 +0000

Unifying incidence and prevalence under a time-varying general branching process

Tue, 01 Aug 2023 00:00:00 +0000

Vertebrate environmental DNA from leaf swabs

Tue, 01 Aug 2023 00:00:00 +0000

Airborne environmental DNA captures terrestrial vertebrate diversity in nature

Thu, 27 Jul 2023 00:00:00 +0000

Closed‐loop Nash competition for liquidity

Mon, 10 Jul 2023 00:00:00 +0000

A Systems Level Explanation for Gompertzian Mortality Patterns is provided by the “Multiple and Inter-dependent Component Cause Model”

Thu, 22 Jun 2023 00:00:00 +0000

Long-term exposure to air pollution and risk of SARS-CoV-2 infection and COVID-19 hospitalisation or death: Danish nationwide cohort study

Wed, 21 Jun 2023 00:00:00 +0000

Estimating fine age structure and time trends in human contact patterns from coarse contact data: The Bayesian rate consistency model

Mon, 05 Jun 2023 00:00:00 +0000

Efficient Speech Quality Assessment using Self-supervised Framewise Embeddings

Thu, 01 Jun 2023 00:00:00 +0000

Intrinsic Randomness in Epidemic Modelling Beyond Statistical Uncertainty

Thu, 01 Jun 2023 00:00:00 +0000

No evidence of sustained nonzoonotic Plasmodium knowlesi transmission in Malaysia from modelling malaria case data

Thu, 01 Jun 2023 00:00:00 +0000

Multilevel Control Functional

Mon, 22 May 2023 00:00:00 +0000

A comparison of short-term probabilistic forecasts for the incidence of COVID-19 using mechanistic and statistical time series models

Mon, 01 May 2023 00:00:00 +0000

Mapping malaria incidence using routine health facility surveillance data in Uganda

Mon, 01 May 2023 00:00:00 +0000

An archetypes approach to malaria intervention impact mapping: a new framework and example application

Wed, 26 Apr 2023 00:00:00 +0000

Impact of proactive and reactive vaccination strategies for health-care workers against MERS-CoV: a mathematical modelling study

Fri, 14 Apr 2023 00:00:00 +0000

Danish Pathology Life Course (PATHOLIFE) cohort: a register based cohort extending upon a national tissue biobank

Sat, 01 Apr 2023 00:00:00 +0000

Spatiotemporal and Seasonal Trends of Class A and B Notifiable Infectious Diseases in China: Retrospective Analysis

Wed, 29 Mar 2023 00:00:00 +0000

Effectiveness assessment of non-pharmaceutical interventions: lessons learned from the COVID-19 pandemic

Thu, 23 Mar 2023 00:00:00 +0000

Sex differences in health care expenditures and mortality after spousal bereavement: A register-based Danish cohort study

Wed, 22 Mar 2023 00:00:00 +0000

Mitigating antimicrobial resistance (AMR) using implementation research: a development funder’s approach

Thu, 02 Mar 2023 00:00:00 +0000

Semi-mechanistic Bayesian modelling of COVID-19 with renewal processes

Sat, 25 Feb 2023 00:00:00 +0000

Seasonal dynamics of Anopheles stephensi and its implications for mosquito detection and emergent malaria control in the Horn of Africa

Wed, 15 Feb 2023 00:00:00 +0000

Cancer burden among adolescents and young adults in relation to childhood adversity: a nationwide life-course cohort study of 1.2 million individuals

Fri, 10 Feb 2023 00:00:00 +0000

Conflicting COVID-19 excess mortality estimates

Wed, 01 Feb 2023 00:00:00 +0000

Assessment of COVID-19 as the Underlying Cause of Death Among Children and Young People Aged 0 to 19 Years in the US

Mon, 30 Jan 2023 00:00:00 +0000

Pyfectious: An individual-level simulator to discover optimal containment policies for epidemic diseases

Mon, 23 Jan 2023 00:00:00 +0000

Markovian Gaussian Process Variational Autoencoders